Thursday, May 31, 2018

Cry me a River

Claire Whipple
Image result for toddler crying gif

I do not remember the first time I cried. Granted, I was only about twenty-four hours old (I know, I was one of those silent babes), but I have no recollection of the first tears I shed. Nor can I remember the first time I smiled, laughed, gasped, or expressed any other of those affectations that are universal to humankind. I have always wondered, however, at the reasoning behind why my infant mind resorted to such forms of emotional expression. In the womb, had I received chemical signals when my mother's hypothalamus secreted dopamine, causing me to associate the sound of her laughter with happiness? I was most curious about those human affectations that develop even before babies possess full visual acuity (around 6-8 months of age) because it was less likely that those expressions could be explained by the human practice of imitating visual cues. What is it in our internal hardware (what we biologists like to call DNA) that activates our tear glands when we experience intense sadness or joy? What are the evolutionary advantages of crying that have allowed it to manifest in every human being? I wanted to find out. 


Image result for cryingToday, most scientists agree that "tears are a form of social signaling that evolved from mammalian distress calls – a clear visual signal in other words that someone is in pain or danger and needs help." This explanation for tears is logical, especially when considering human babies and their inability to communicate. When infants feel any form of discomfort or stress, they often cry, simply because they have no other method of seeking assistance and alleviating their discomfort. This theory concerning lacrimation also holds true for adults, as the tears of an adult with a newly-broken leg will often result in their receiving medical assistance and support. 

Image result for crying gifHowever, this theory does not explain why many only cry when they are removed from the presence of all others, or why someone would burst into tears while they're driving alone. In these cases, there is no one to which these social signals can be sent, yet these occurrences happen quite frequently. These more emotional tears contain higher levels of stress hormones than reflex or basal tears and are produced in response to a gamut of emotions, including stress, pleasure, anger, sadness, and suffering. They also include leucine enkephalin, an endorphin and natural painkiller that some scientists claim is responsible for the cathartic feeling one has after a hearty, blubbery cry. Basically, upon experiencing one of the aforementioned emotions, our hypothalamus produces the acetylcholine neurotransmitter, which then travels to the lacrimal gland to induce tear production. Many scientists have proposed differing purposes of these tears, such as to release stress hormones, to alert oneself of a problem that must be addressed, or simply to espouse vulnerability.

Of course, societal and cultural factors play into why some prefer to cry in solitude rather than in company, or why males tend to cry less than females (even though some studies have found that a hormone in testosterone can reduce production of acetylcholine, which would inhibit tear production). But when it comes down to it, the common factor of tear shedding among hundreds of studies seems to be the utilization of empathy and the subconscious desire to do something when faced with an emotionally difficult problem, even when one is unable to solve it. So the next time you reach for that box of tissues, send your brain a silent thanks for using tears to express your emotions instead of incessant screaming or a mental breakdown.
Image result for crying gif baby

Wednesday, May 30, 2018

Germs: the Key to Ruling the World

Say it with me now, “In 1492, Columbus sailed the ocean blue.” We’ve all heard this rhyme before and we all know what happens next: Columbus ‘finds’ North America, Spain colonizes the land, the natives are all but wiped out, and the great kingdom of Christianity expands boundlessly. The Spanish accomplished this feat through their advanced technology, wonderful guns, and a their own secret weapon: germs.

Image result for columbus's journey
Figure 1: Columbus' famous journey
Image result for disease deaths of natives during conquistador
Figure 2: the first encounter between the Spanish and the Natives (watch out for germs!!!)

Some historians approximate that almost 95% of the native population was killed by European germs. The most deadly among them was smallpox. So let’s dive in and find out how smallpox handed the Western Hemisphere to them gosh darn Spaniards.

 Smallpox is a virus, woohoo our favorite!!! A virus is a little blip that is genetic information all bundled up in a little cocoon of protein. Smallpox has its genetic information stored in its beautifully stable DNA double helix. It’s been so effective at killing its hosts in the last thousand years that it barely has to mutate to survive. One study found that in 10 years the only mutations in the genome were three single nucleotides. Anyhoooo, so the smallpox virus enters the human host through the nose or mouth, moves to the lungs, multiplies, and spreads through the lymphatic system. It causes lots of little pustules to form throughout the skin that are filled with smallpox DNA. When these pustules *pop* they spread smallpox DNA to whomever is around. Infected persons tend to die with 12 days. :((((sad.
Image result for smallpox virus
Figure 3: the smallpox virus!!!

But wait!!! Not all the Europeans died from smallpox. Smallpox became transmitted to humans from farm animals. As Europeans farmed and lived with their animals, they became exposed to the big S. But some people became immune. Stick with me here, it’s going to get a wee bit confusing. When a pathogen (a little baddy guy) enters the body, we got some ways to fight em. Certain cells will eat the bad guy, chop it up real small, and then display it for the rest of the immune system to see. The cell essentially briefs the other cells and says, “Look at this guy. I. Just. Ate. Him. If you see anything that might possibly even resemble this, KILL IT on sight.” In response to this, the B cells produce antibodies that essentially neutralize the threat of those goshdarn smallpox viruses. Through this immunity, Europeans were able to have tiny smallpox virus in their bodies that didn't cause them harm but could be introduced to other populations. BUm bUM bUm!!!
Back to the story!!! When those silly Spaniards arrived on Hispaniola they brought with them smallpox.The virus moved from the immune European population to the native population that had never seen this disease. The cells in the native people's bodies could not create antibodies in time so the disease spread like wildfire. The virus spread faster than the Spanish who had to lug around all their conquistador stuff. Many times the Spanish would arrive at a village to conquer it and find it had already been conquered by the best ally ever: SMALLPOX.

And that's how it's done. Moral of the story: if you want to conquer a place inhabited by people already all you have to bring with you are a couple germs that those people haven't seen before.

Want to read more? Check this out
Photos from: 1, 2, 3, 4, 5, 6

Tuesday, May 29, 2018

Brain Medicine: MAOIs, SSRIs, and DBT

It is estimated that 5 percent of the world population suffers from depression.  And I'm part of that 5%. From Sigmund Freud's early idea of psychoanalysis to the many specific classifications and treatments we now have for depression, mental health care for the illness has come a long way. Most people with severe depression are recommended two aspects of treatment that work in conjunction - medication and therapy.

That's a lot of people! How can they all cope? 


Today, there are several major types of medications that are used to treat depression. One of the earliest treatments included monoamine oxidase inhibitors (MAOIs). This method was discovered by accident, originally being used to treat tuberculosis in the 1950s when doctors noted its mood-elevating effects and started using it on patients with depressive symptoms.

MAOIs work through preventing an enzyme called monoamine oxidase from removing neurotransmitters involved in good feelings from the brain. Hence the name, monoamine oxidase inhibitor! It makes norepinephrine, serotonin, and dopamine more available to cells and circuits affected by depression. However, this type of medication has been replaced by the much more effective selective serotonin reuptake inhibitor, or SSRI.

My depressed synapses make me want to take a syNAPse. 

SSRIs function in a similar way, but have significantly less side effects. They also target serotonin specifically. Hence the name selective serotonin reuptake inhibitor! (Scientists are good at naming stuff! All the letters have meaning!) When people refer to antidepressants, they are probably talking about an SSRI. The most popular brand names are Lexapro, Zoloft, and Prozac.

Perhaps even more so than medication, therapy is very important in the lives of people with depression. It has been shown that therapy increases metabolism in the hippocampus and dorsal cingulate and decreases it in the dorsal, ventral, and medial frontal cortex. The point is, the brain is so reactive to change that what might seem like just having simple conversations is actually changing the structure and function of your body! A recent study has shown that therapy strengthens certain connections in the brains of people with psychosis and they are associated with the reduction of symptoms on a long-term level, even eight years later. The brain is incredibly plastic (not made of plastic, but meaning it is able to change throughout life).

The brain does some impressive things! Makes you sad, makes you happy, makes you have a sense of consciousness, etc. Wow. 
Most general psychotherapy is talking about problems and trying to figure out how to manage them. In the past few decades, more specialized, highly effective forms of therapy have been developed.  I have found dialectical behavioral therapy (DBT) very helpful to deal with my depression personally! DBT consists of mindfulness, emotion regulation, distress tolerance, and interpersonal effectiveness. It is useful for people with all kinds of mental illnesses, like bipolar disorder, post-traumatic stress disorder, and borderline personality disorder, not just major depression.

For me, depression sometimes feels abstract and non-quantifiable. It feels like a concept in my life that will never go away. Although it is an extremely personal illness that affects everyone differently for different reasons, it is often helpful to think of it in a scientific way, especially when discussing how to cope with it. After all, my brain just needs some help with the serotonin!

Monday, May 28, 2018

Octopus: The 200 IQ Creature of the Sea

When thinking of intelligent life outside of the realm of human beings, what is the first animal that comes to mind? Monkeys? Dogs? Crows? Whatever you thought of, it was most likely not an octopus. Most people would rightfully assume that octopuses, like many other sea creatures are not smart and do not have complex brains, but these savvy cephalopods are far more than meets the eye.

                                                                                ▲Coconut octopus doing what it does best

First appearing 296 million years ago, octopuses have had millennia to evolve and adapt to the changing environment of the Earth. Over that time they have been able to develop into advanced creatures that don't nearly get the credit they deserve. With a total of over 500 million neurons, mostly in their arms, octopuses can truly experience the world and a have been shown to be able to solve simple puzzles, use coconuts as dens, and find novel ways of escaping captivity. In addition to their big brains, these ocean dwellers have powerful visual systems which add even more to their impressive skill set. With their unique U-shaped eyes, octopus are able to see a wide spectrum colors which researchers hypothesize could help them perfect the color manipulation techniques that many species use when hunting prey or hiding from predators.

                                                                                    ▲Blue-ringed octopus in all its glory
                                                                               
Although we have discovered them to be super smart, these magnificent creatures have been difficult to conduct research on as their intelligence comes with a price: stubbornness. Many spend their time in captivity trying to get out of their enclosure and others refuse to participate in exercises and experiments.
                                                                                                ▲Blue coconut octopus

Another difficulty that comes with working with most cephalopods of higher intelligence is their short life spans. Most octopus only live for a couple of years making it hard to test their learning and memory. While annoying, this awkward scenario poses an interesting question: What is the point of having a big brain if you don't have much time to put it to use?

                                                                                                 ▲ Common octopus

Some think that it may have to do with how advanced their bodies are with their millions of neurons and suction cup covered arms but there is no conclusive answer and more research and thinking has to be done to come up with a hypothesis for why these animals evolved this way. But even though we don't have an answer to why octopus are so complex, it is fascinating and thrilling to know that their is intelligent life in the vast waters of our planet that may be as smart as the pets we keep in our own homes.

Ebola: Rushing to Find a Cure

Before I took AP Biology, I assumed I would be a neurologist when I grew up. I have spent two summers studying the brain and discovering if people lie more when they are around their friends. I was so excited to learn about the nervous system, but then Ms. Eckert taught us the immune system and my life ambitions changed.


The most interesting part of the immune system is how prevalent it is among animals on Earth. The immune system works tirelessly in our bodies to fight off harmful bacteria and viruses, and we do not even know this is happening. However, one of the viruses that the immune system had difficulties fighting off in the past was the Ebola virus. The possibility of this dangerous virus traveling from Sub-Saharan Africa to New Jersey occurred in October 2015 when nurse Kaci Hickox came back from West Africa through New Jersey after assisting health officials in treating patients with Ebola. Ms. Hickox was quarantined upon arrival in New Jersey due to a high fever, which is a symptom of Ebola. Other symptoms include muscle pain, fatigue, vomiting and abdominal pain.


Ms. Hickox was helping treat patients that were infected through the first modern outbreak of the Ebola virus, which began in October 2014 and lasted until June 2016. In response to the quarantine, Ms. Hickox sued the state of New Jersey because she felt "kidnapped" for 48 hours. My close relative works in the Governor's Office and was involved in reviewing documents related to the lawsuit filed by the ACLU on behalf of the nurse. Last summer, I went to the ACLU's Summer Institute, and hearing about this story from my relative made me think about how the ACLU fights for civil liberties.


Although the Ebola virus outbreak ended in 2016, it resurfaced and another outbreak was declared on May 8, 2018 in the Democratic Republic of the Congo (DRC). Specifically, the virus has reached Mbandaka, a major city in the DRC. This is a huge concern to health officials because the virus can spread quickly.


Fortunately, since the end of the previous outbreak of the Ebola virus in 2016, a vaccine to fight the virus was developed and 9,000 doses were recently delivered to the DRC. In trials, this new vaccine has shown a 100% success rate in preventing people from being infected by the Ebola virus. 


Vaccines, including the one fighting the Ebola virus, assist our immune systems fight viruses. Specifically, vaccines help the body develop active immunity which is long lasting immunity that is developed through immune system cells. To acquire active immunity, special immune cells known as B-cells and T-cells learn to recognize different pathogens,  which are harmful organisms or viruses, and then these cells spring into action! B-cells release antibodies, which are proteins that stick to free-floating pathogens such as viruses and bacteria, which makes them easier to catch. T-cells, on the other hand, kill diseased cells to protect other cells from infection.  


Once the immune system fights off the original encounter, the memory B-cells and T-cells remember the pathogen. If the pathogen is ever encountered again, then the immune system will activate quickly and remove the threat.  


To help our immune system gain acquired immunity, vaccines release a small amount of pathogen into the body and the B-cells and T-cells are able to attack and remember, allowing for immunity. 



Based on this information, if someone does not receive the new Ebola vaccine, then he or she has a chance of contracting the virus. Once the virus enters the body, the virus works by targeting dendritic cells, which signal killer T-cells to attack pathogens. Without the dendritic cells, the immune system cannot recognize pathogens and the virus can replicate quickly. Once the virus moves on, it causes damage to blood vessels. Without functioning blood vessels, an infected person will see a drop in blood pressure and multiple organ failure if the virus is left untreated.


If, however, a person receives the Ebola vaccine prior to being infected by the Ebola virus, when the Ebola virus enters the person's body, his or her immune system is ready for the attack. Specifically, the memory B-cells and T-cells will be activated and attack the Ebola virus, which will cause the virus to be eliminated. The hope is that the new Ebola vaccine will help save many lives. Although our immune systems may get by with a little help from vaccines, they really are our microscopic protectors that work tirelessly to help keep our bodies going throughout the day! 


Team City Bird vs. Team Country Bird

For those who have encountered the combatant pigeons of New York City, it likely comes as no surprise when I say that birds that live in the city have different behavioral patterns. The environmental conditions in the city are so drastically different than those of rural areas, that they place a selective pressure upon the birds, causing them to biologically adapt over time. In some ways, the pressures caused by city life can improve populations of birds, and in other ways, they are put at a disadvantage.


Birds in the city are forced to face several environmental differences that affect how they must behave to survive. There is a heightened amount of stimulus as well as population density in cities. At any given moment, there is noise, traffic, bright lights, and many people and different types of animals fighting for space and resources. In order to survive and reproduce, city birds tend to be forced to adopt a more aggressive demeanor and be willing to fight and assert themselves when necessary.

When observed, urban birds show off their aggressive sides in response to trouble. Much of this comes from biological evolution over time, but in addition to the foundation that evolutionary tendencies provides, the frequency of exposure to situations like these makes the birds better equipped for conflict going forward. Birds in the city also show raised aggression during mating as a result of the density of competition.


Additionally, it was found that city birds may even have a greater immune system and higher intelligence than country birds. I would hypothesize that their immune system would be better as birds are exposed to a much less clean environment, exposed to pollutants and food scraps, and therefore would naturally build antibodies to different pathogens more quickly. They could also have become genetically predisposed to have a better immune response over generations (read more about inherited immunity here).

One downside of life in the city for birds is the potential of more stress, which can shorten the length of their telomeres. Telomeres, which are like caps on chromosomes, shorten over time, and their shortening can decrease one's lifespan. With exposure to a great amount of stressors, city birds may face more wear and tear than country birds.

It is up to you whether you find that city birds or country birds are superior. Frankly, there is no true purpose in determining which type of the amazing creatures reigns supreme. City birds seem to mirror their human city-mates, having to endure great stress, but resultantly becoming more aggressive and well-equipped in the face of conflict. Country birds are not as likely to have these traits, but they also face much less external stress. The choice is up to you; Team City Bird or Team Country Bird?

The Secret to Sustaining the Planet

Figure 1: Meat-free meme
Ok, so I know everybody is going to say "Oh look it's a vegan being preachy and trying to get me to convert to their lifestyle." However, that statement would be incorrect. I am simply here to discuss how, if the entirety of the planet cut meat out from their diets, we could possibly combat global warming. No, I'm not making this up to push my agenda on you all, although it could certainly help.
  


Figure 2: The greenhouse effect model


If you have not heard about greenhouse gases, they are any group of compounds that can trap heat in the atmosphere. They bring earth's surface to a much higher temperature than it would be in their absence (AKA global warming). Sounds bad right? Yeah, it certainly is. 

So where does the meat come in? Well, it turns out that major factory production of meat releases more greenhouse gases than the entire transportation industry and 10 to 40 times more than the production of fruits and grains. Also, 1/3 of the worlds fresh water is used for the production of meat (which could be used to hydrate those in Flint, Michigan). Water pollution on factory farms has gotten really bad and produces as much sewage waste as a small city.  The livestock being raised as food eat nearly all of the grains produced that could instead be used to feed humans in poverty (nearly 800 million of them) not to mention a bag of rice is a lot cheaper than a rack of ribs.  

According to a Scientific American article, The Environmental Working Group says that nearly 200 million pounds of pesticides and nitrogen fertilizer are spread over 150 million acres of cropland yearly, producing nitrous oxide. Cattle also produce 20% of the United State's overall methane emission. 

Moreover, 4/5 of deforestation in the Amazon rainforest could possibly be linked to cattle ranching. Antibiotics used to keep animals healthy (up until their execution date) has lead to antibiotic-resistant bacterias that lead to 700,000 human deaths a year, and it's only the beginning. 



Figure 3: Milk meme
So, we've covered meat and you're probably thinking "Yeah great, meat is bad but why the heck would I stop eating grilled cheese sandwiches? What about my truffle omelet?" Do not fret! We're getting there. 

 19% of the global water footprint from animal agriculture (which is 25% if the worlds total global water footprint) comes from dairy cattle. It comes from feeding the animals, keeping them hydrated, and cleaning up after them. Onegreenplanet.org made this list that really puts this into perspective.
  • 1 cup of yogurt requires 35 gallons of water
  • 1 scoop of ice cream requires 42 gallons of water
  • 2 slices of cheese require 50 gallons of water
  • 1 cup of Greek yogurt requires 90 gallons of water
  • 1 stick of butter requires 109 gallons of water
They also mention how one glass of soymilk only uses 9 gallons of water, so even substituting soymilk for regular milk once a week makes an impact. 

The dairy industry also produces 4% of the worlds greenhouse gases, 27% of which is methane (which is bad!).  Out of all the food industries, cheese emits the third highest amount of greenhouse gases following right behind beef and lamb.

Figure 4: This could be me and you!
What exactly would happen if, for some reason, the entire planet went vegan? Paul Allen, a journalist for BBC wrote an article explaining the expected results. He says "If we all went vegan, the world’s food-related emissions would drop by 70% by 2050 according to a recent report on food and climate in the journal Proceedings of National Academy of Sciences (PNAS). The study’s authors from Oxford University put the economic value of these emissions savings at around £440 billion". He also notes, that while it's possible for those who follow a vegan diet to eat unhealthily, a worldwide plant-based diet would reduce coronary heart disease, strokes, type 2 diabetes and even some cancers. There would be 8.1 million fewer deaths per year and up to 1,000 billion dollars could be saved on health care. 

If you're not convinced yet, check out some of these films on Netflix:
cowspiracy
 What the Health
 Sustainable
 Live and Let Live
Also, Perhaps consider joining in on the trendy meatless Monday or dairy-free dinners! You don't need to be all or nothing, but remember where your food comes from. Vox.com put out an article about the issue. Many people ask how they can help the planet, and the sooner people learn more about the impact of their food, the better. Pick foods that you know have a smaller carbon footprint, for example choosing fish over steak. And while the vegan diet has the smallest carbon footprint of them all, the Mediterranean diet is a close second. Check that out here.
Figure 5: Me being just a little pushy

Thursday, May 24, 2018

Why Music?

Is music an integral part of your life? For most of you, the answer is yes. Whether it's playing an instrument or watching movies with an epic soundtrack, music is ingrained in our lives. It evokes a feeling whenever we listen to it. When we listen to music, dopamine is released. It's the same chemical that is released when you eat amazing food or take psychoactive drugs. So how does music affect our brain, and why do we like it so much?


Dopamine 
Your brain chemistry is altered when you listen to music.  Music, like food or sex, releases dopamine in our brain, which causes us to feel pleasure. Dopamine plays important roles in attention, memory, mood, learning, sleep, and movement. When dopamine is released, you are happier. The strongest release of dopamine is when music is at its emotional peak.

Dopamine and Seratonin Pathways

The Brain
The amygdala, which processes emotion, and the hippocampus, which is vital for memory, influences our music preferences. Music stimulates the amygdala much like how other stimuli such as scent and sound affect it. The hippocampus is responsible for our emotional responses via regulation of our brain's chemical response. Positive emotions evoked from listening to music that we enjoy decreases the amount cortisol, a stress hormone, via the hippocampus. Our brain reacts to emotional music; the hippocampus stimulates the release of brain chemicals that affect the brain's function. It has been hypothesized that the more we listen to music that evokes emotion, the more our emotional responses to music change.

Music's effect on the brain

I have always loved classical music. Both of my parents are classical musicians and classical music was the only thing I listened to as a kid. After I began middle school, I explored other genres of music and my whole perspective on music changed.  I like drastically different music that ranges from Tchaikovsky to Khalid.
Reinforcing musical patterns by playing the violin with my brother

Patterns
We typically don't like genres of music that we're not familiar with. People like the predictability of music. One's reaction to music stems from their past musical experiences. Your brain will react to music based on past musical experiences and will choose whether or not to activate your brain's pleasure center. If you have never heard classical music before, it is very likely that you will not enjoy it the first time. Our music preferences change over time, and the familiarity of certain music will allow you to enjoy it more. You just have to step out of your comfort zone!

Consonant vs Dissonant Intervals
Sounds can effect listeners in different ways. In general, consonant intervals are more pleasant to listeners whereas dissonant intervals evoke a sense of unease and tension. The disposition of dissonant and consonant intervals can be used to evoke a specific mood or feeling.

A study led by Josh McDermott, an assistant professor of neuroscience at MIT, and Ricado Godoy, a professor at Brandeis University, showed that the Amazonian tribe known as Tismane were indifferent to consonant and dissonant intervals. The same test was administered to college students in the U.S. and to residents in Bolivia, who had moderate exposure to Western music. American students overwhelmingly preferred consonant intervals to dissonant ones while the Bolivians' preferences was in between that of American students and Amazonians. It was determined that the common preference for consonant musical chords is likely due to cultural, and not biological factors. Humans are not biologically programmed to prefer any type of music; it is more nurture than nature.

Explore!
Explore genres that you usually wouldn't! Release that dopamine!

How to Shred the Waves...And Not the Environment!

Surfing has become a growing sport, and surfers have become more and more particular about their gear. There are thousands of wetsuits, boards, sunscreens, and board waxes to choose from—and the choice is based on preference. But the question has arisen: What makes these products so different? After examining the chemicals in sunscreens and board waxes, the fabrics of wetsuits, and plastics in boards, environmentalists have discovered a cause to the negative effect on sea plants and animals. These materials often leave a large carbon footprint and lead to increased deforestation, taking away habitats and ecosystems. But have no fear! These environmentalists and their teams have come together to create high quality surfing gear that does not harm the environment.

A surfer friend of mine in his natural habitat!

Wet suits made of polychloroprene, or neoprene, are widely used because the synthetic rubbers are flexible for a large range of temperatures. However, because they are synthetic, the toxins eventually become absorbed into the water or skin it contacts, polluting the ocean and potentially harming the marine life. Alternatives to the brands using “neoprene” are Henderson, Patagonia, Matus, and Swish.


 Boards now are commonly made with known carcinogens—such as toluene diisocyanate—and other harmful chemicals that may harm the environment and ourselves just as the neoprene in the wetsuits can. To get around this, companies like Wave Tribe, Waste to Waves, Pacific Island, Surfboards, Harmony Surfboards, Earth Technologies, Solo Surfboards, and Lost Surfboards began to make boards out of non-toxic, renewable, recycled, and sustainable materials. Surfers now, like myself, are beginning to prefer eco friendly gear rather than the synthetic, harmful materials!

Sunscreen is a necessity as surfers sit on their boards, sun reflecting off of the water and onto their face while it also beats down on their shoulders as they wait for a wave. Luckily, brands like Thinksport, True Natural, and Suntegrity can be used to protect your derma and keep the ocean naturally clean!

 Board waxes are used by surfers to keep their grip once the board hits the water, making it slippery. With the eco friendly boards mentioned above, many have surfaces made of cork—eliminating the need for wax. However, for those who love the sticky-board feeling, two brands to try are Surf Organic and Matunas. These companies use renewable ingredients, recycled packaging, and eco friendly products; these ingredients are much safer than the hydrogenated soy bean oil found in many common waxes.


So surfers, keep the shredding for the waves and keep our environment safe!

The Likelihood of You

All my life I've been told by almost everyone that I meet, "You look so much like your dad!" At the same time, my sister has been told, "You look so like your mom!" And we were both told, "You and your sister look so much alike!" That confused me as a kid, if I look like my dad and my sister looks like my mom, how can we look alike?

Image result for what gif
I'm sure this is not an unusual occurrence, a lot of people know that they look like their family members, what many people do not know, however, is who they are most related to. Now you might be thinking, "What, I'm related equally to both of my parents, so I'm equally related to all of my grandparents, 25% each," and the truth is...that's not necessarily true.

In most cells, when cell division occurs, the DNA is replicated exactly and the result is two cells that are identical to each other and the parent cell (save for the occasional mutation of course), but when sperm or egg cells are made, they go through a different process, called meiosis. During meiosis, one cell divides to make four genetically different cells. (Just for reference, a cell with the normal number of chromosomes, for humans that is 46, is called diploid; and cells with half the normal number of chromosomes is called haploid).

To prepare for the division, the cell's DNA first replicates, so that there are two identical copies of each chromosome. The cell then divides (for more information on how the cell divides click here) and results in two daughter cells. Those cells then divide, without replicating their DNA, leaving four genetically unique haploid daughter cells (Well, for males it is four, for females the cytoplasm is unevenly divided, so that one cell gets the majority of the nutrients and the other cells are polar bodies and remain unused--females get one usable egg out of the whole process).

The main sources of genetic differences from the original cell come from two processes that occur before the first division. The first process creates recombinant chromosomes. The duplicated chromosomes line up together with the corresponding chromosome from the other parent, and they switch pieces of their DNA (see image below), this creates a completely unique set of chromosomes. This means that when the DNA is divvied, and later contributes to the zygote, that DNA can be in any percentage from each grandparent. So, you could be 41.6% of your father's mother and only 17.3% of your mother's father.
Image result for recombinant chromosomes
https://www.differencebetween.com/difference-between-parental-type-and-vs-recombinant-type-chromosomes/

The other process that contributes to genetic individuality is independent assortment, which means that when your chromosomes line up during meiosis, they line up in a random order. This means that the chromosomes line up in any order and either chromosome from the pair (either from the mother or father), can go to either of the new cells. Just to help you sort this all out, I'm talking about how the egg and sperm are made. So when I say mother or father's chromosome during meiosis, that corresponds to the grandparents' chromosomes for the baby, which resulted from the fusion of egg and sperm.

These processes mean that the likelihood of you being you are incredibly low. If we do not consider recombination or the likelihood of that specific egg dropping and that specific sperm meeting it, and we just consider independent assortment you are about one in 70 trillion! So, it's actually insulting when someone says you're one in a million!

It is said that there are six other people on the earth that look almost exactly like you, but the truth is that the probability of even your siblings being identical to you (unless you are twins) is incredibly low, so you truly are unique!



More info/helpful links
Meiosis
Diploid
Haploid
For information on cell division
Recombinant Chromosomes
Independent Assortment

Wednesday, May 23, 2018

New Plastic-Eating Enzyme Could Help Save the World! (Maybe)

In 2016, scientists made a revolutionary discovery at a waste center in Japan: bacteria that had evolved by natural selection to eat and break down plastic! These bacteria possess a plastic-eating enzyme that may transform the fight against pollution. Perplexed by this potential environmental lifeline, international research teams at the University of Portsmouth resolved to investigate the capabilities and evolutionary history of the enzyme.

Plastic water bottles gathered at a waste plant

Scientist and X-ray crystallographer John McGeehan from the University of Portsmouth and Gregg Beckham from the U.S. Department of Energy's National Renewable Energy Laboratory (NREL) study the crystal structure of the new enzyme and have determined that it is able to fully break down PET plastic (polyethylene terephthalate), a kind of plastic typically found in bottles, which litter oceans and other marine ecosystems.
Structure of the plastic-eating enzyme

While manipulating the enzyme, McGeehan and Beckham and their research teams accidentally altered it to become even more efficient at plastic degradation. With the alteration, the enzyme can degrade PET plastic within three days.

Plastic degrades in the environment extremely slowly, so when people dispose of plastic bottles, they end up in landfills, bodies of water, or homes to all kinds of organisms. Plastic incineration increases carbon emission, which is known to contribute to climate change. Millions of tons of plastic bottles are produced each year, meaning that the rate of disposal and breakdown of plastic in bottles cannot keep up with the rate of their industrial production. Billions of pounds of plastic currently lie in the world's oceans. Plastic debris is devastating for wildlife, and has resulted in the death of thousands of marine mammals, seabirds, sea turtles, and fish through plastic entanglement and ingestion. The drastic endangerment of many marine species has the potential to devastate the environment and their respective marine species. As we learned this year, a decrease in the population of one species can cause the near-extinction of or over-reproduction in other species. Plastic debris also absorbs harmful pollutants, which can make their way into humans via the food chain after debris is ingested by marine wildlife. These pollutants can severely debilitate the human body by inducing random cancer-causing mutations and limiting hormone regulation, production, and signaling.

Remember to keep in mind that the engineering of the more efficient enzyme occurred coincidentally! Random mutations and alterations can determine the course of humans' lives—often for the worse. However, the serendipitous refinement of this beneficial plastic-eating enzyme reflects the fact that randomness can also positively contribute to environmental protection. Right now, the teams at the University of Portsmouth and NREL are working to further improve the efficiency of the enzyme, so that one day it can exponentially reduce the content of plastic in the world's oceans and marine habitats, thereby saving numerous species of organisms around the world.

For more information on plastic pollution, read:
Garbage in the Oceans: The Plastic Bag on the Side of the Highway

Nature: A Designer's Toolbox

In 1989, Japan's Shinkansen bullet train had a problem. It was fast, really fast. Pushing 167 miles per hour fast. Every time it entered a tunnel, it pushed waves of atmospheric pressure through the other end. Creating a micro-pressure wave, a phenomenon called "tunnel boom," the air left the tunnel with a sonic boom that could be heard from up to 400 meters away. And in residential areas, that was a problem. In response, Japan brought in an engineering team to design a quieter and more efficient train. In a moment of inspiration, lead engineer Eiji Nakatsu had an idea: to redesign the system based on the aerodynamics of birds, most notably of all, the Kingfisher.



The Kingfisher is a species of bird that dives into water to catch its prey. From its vantage point over a river or stream, the Kingfisher can descend into a controlled vertical dive right above its target, ensuring that its beak is the first thing that enters the water. And that, its dart-like bill, is what Nakatsu was interested in. The unique shape of its beak allows it to dive while barely making a splash, due to its streamlined and aerodynamic structure. 
Nakatsu took the shape to the design table, and after multiple tests found that the quietest nose design was the one most closely modeled after the Kingfisher's beak. The redesign debuted in 1997, and the Shinkansen train was 10% faster and stayed under the 70 dB noise limit in residential areasall achieved with the beak of a Kingfisher. 

This type of design is called biomimicry, a process that looks to the natural world for inspiration to drive innovation. The thought process is simple: nature has had billions of years to test, tweak, and change the organisms around us through evolution, and in turn, has already solved many of the problems we, or the designer, face today. Humans have existed on the planet for only about 200,000 years, while the natural world has had billions of years of research and development. Its time-tested structures, patterns, and solutions are what biomimicry seeks to bring to innovation.  And that's the end goal for biometric design: to create products, systems, and even cities that are indistinguishable from nature. 

The Shinkansen bullet train is only one of thousands of examples of biometric design in the world today. Hospitals have mimicked the surface of shark skin to create bacteria-resistant plastic surfaces. Shark skin itself isn't an antimicrobial surface, but it's highly adapted to resist attachment of living organisms to its surface, something inherently useful for limiting the amount of infections patients can get in hospitals. 

Researchers studying the Stenocara beetle, living in the arid African Namib dessert, have recreated its fascinating ability to collect moisture from the air in water collectors around the world. A distinct pattern of nodes along the beetle’s back allows it to collect moisture from fog, which trickles down its legs to its mouth. Developing these biomimetic patterns in human technology can expedite water collection in areas of need. 

Wind turbines can be arranged in the same drag-reducing pattern that schools of fish swim in. By imitating schools of fish, engineers can increase wind farm output by 10 times that of traditional farms. 

Moon jellies have a highly efficient mode of propulsion, where they suck water into their bells and then contract their bodies, pushing out the water behind themselves. This kind of movement, researchers say, is extremely energy efficient. The same low energy-high efficiently thrust mechanics of the moon jelly can be applied to slow-moving ocean monitoring devices for nautical researchers and the Navy. 



One of the most famous examples of biometric design came from Swiss engineer George de Mestral. In 1941, he was removing burrs from his dog when he decided to examine them under a microscope out of curiosity. Astonishingly, he found that the small hooks on the burrs adhered exceedingly well to the looping structures of fur and fabric's, sparking an idea to recreate the mechanism artificially as a fastener. And thus, came the invention of velcro



For designers, the natural world can have the solutions to any problem. You just gotta know where to look.